DisGeNET - a database of gene-disease associations

List of associated variants

Human immunodeficiency virus (HIV) II infection category B1, C3854222

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs8099917		0.581	0.600	19	39252525	upstream gene variant	T/G	snv		0.16	60
rs2395029	HCP5	0.790	0.320	6	31464003	non coding transcript exon variant	T/G	snv	2.7E-02	2.4E-02	12
rs2241766	ADIPOQ ; ADIPOQ-AS1	0.608	0.720	3	186853103	synonymous variant	T/C;G	snv	8.0E-06; 0.13		48
rs4149056	SLCO1B1	0.633	0.480	12	21178615	missense variant	T/C	snv	0.13	0.12	45
rs763059810	CXCR4	0.623	0.600	2	136115750	missense variant	T/C	snv	4.0E-06		41
rs7439366	UGT2B7	0.752	0.320	4	69098620	missense variant	T/C	snv	0.56	0.57	16
rs9264942	LOC112267902 ; HLA-B	0.763	0.400	6	31306603	intron variant	T/C	snv		0.34	15
rs1126478	LTF	0.763	0.240	3	46459723	missense variant	T/C	snv	0.41	0.51	11
rs765502022	UGT2B7	0.827	0.240	4	69112695	missense variant	T/C	snv	1.6E-05		8
rs28399499	CYP2B6	0.827	0.280	19	41012316	missense variant	T/C	snv	5.1E-03	2.2E-02	6
rs1188975135	APOBEC3C ; APOBEC3F	0.882	0.040	22	39017772	missense variant	T/C	snv	4.0E-06		4
rs1292288729	CYP2B6	1.000		19	41009375	missense variant	T/C	snv		7.4E-06	1
rs774027752	CYP2A6	1.000		19	40845472	missense variant	T/C	snv	8.0E-06	1.4E-05	1
rs10833	IL15	0.776	0.160	4	141733394	3 prime UTR variant	T/A;C	snv			10
rs9939609	FTO	0.559	0.720	16	53786615	intron variant	T/A	snv		0.41	98
rs57302492	CD207	1.000		2	70831099	missense variant	T/A	snv	7.0E-02	8.9E-02	1
rs756151230	ERVW-1 ; GATAD1	1.000		7	92470377	missense variant	G/C	snv			1
rs3745274	CYP2B6	0.672	0.480	19	41006936	missense variant	G/A;T	snv	4.0E-06; 0.27		30
rs17235409	SLC11A1	0.653	0.600	2	218395009	missense variant	G/A;C	snv	4.9E-02; 4.1E-06		31
rs1799864	CCR2	0.572	0.680	3	46357717	missense variant	G/A	snv	0.13	0.12	68
rs14158	LDLR	0.851	0.160	19	11131368	synonymous variant	G/A	snv	0.24	0.22	5
rs7248668		0.925	0.080	19	39253181	upstream gene variant	G/A	snv		0.16	3
rs1272938495	CXCR4 ; LOC112268426	1.000		2	136115225	missense variant	G/A	snv	4.0E-06	7.0E-06	1
rs1433591886	PPIG	1.000		2	169633213	missense variant	G/A	snv	4.0E-06		1
rs3740996	TRIM5	1.000		11	5680051	missense variant	G/A	snv	0.13	0.10	1